The short answer is yes.

Long answer:

All of the systems you're talking about can be modified by a competent developer, so if you're willing to invest in custom development, you can definitely create the system you're hoping to put in place.

Out of the box, it may be possible, but you'll need to coordinate your questions between the support teams for the tools you're using.

The math isn't hard, so the custom development would be a matter of doing the math in the right order, and feeding the adjusted amounts to the next link in the chain. How easy that is to actually perform will depend on how developer-friendly each tool is.

I have extensive experience modifying WordPress and WooCommerce, and I've used AffiliateWP system for clients in the past, so if you need help with planning, I could give you a high-level implementation strategy to carry down to your developers.

Or, if you need developers, I'd be happy to make an intro to a team I trust that has been customizing WordPress and its plugins for years.

Good luck!